PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005976001
Common NameGSBRNA2T00005976001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 275aa    MW: 29736.4 Da    PI: 9.7094
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005976001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.93.8e-29121180258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           +++VN+KQy++I++RRq+Rak+++   ++kl++++rkpy+h+SRh hAlrRpRgsgGrF
  GSBRNA2T00005976001 121 GTIFVNSKQYHAIIRRRQSRAKAAAvldQNKLSSRGRKPYMHHSRHLHALRRPRGSGGRF 180
                          689*********************9999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-30118183IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.99119183IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-20122144IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-23122180IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-20157180IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAMQTSPQIS WWNAFGSQPL PPVSLAGDSD SFGSAVETEH GVDKQNNSAT HLAFSLGDVK  60
SSRVVAKPHG AAFSMQPPCL ELGFTQQQMY PCVEQGYYGV VSAYGSQSRV MLPLNMETED  120
GTIFVNSKQY HAIIRRRQSR AKAAAVLDQN KLSSRGRKPY MHHSRHLHAL RRPRGSGGRF  180
LNTKSGTDAK KADGTKQTQS QAMSQQSNSQ NSEVLHPESG TMNLSTGLNV SGSEVTSMNY  240
FLSSPVHPLG GMVMPGKWTA SVAAMDNGCC YFKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_A9e-17120181260HAPB protein
4g91_A9e-17120181260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529911e-148AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124866.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
RefseqXP_009124865.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X2
RefseqXP_009124864.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
SwissprotQ9M9X41e-160NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A078G0250.0A0A078G025_BRANA; BnaAnng02740D protein
STRINGBra040529.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-152nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]