PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00005976001

Common Name

GSBRNA2T00005976001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 275aa MW: 29736.4 Da PI: 9.7094

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00005976001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	92.9	3.8e-29	121	180	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +++VN+KQy++I++RRq+Rak+++ ++kl++++rkpy+h+SRh hAlrRpRgsgGrF GSBRNA2T00005976001 121 GTIFVNSKQYHAIIRRRQSRAKAAAvldQNKLSSRGRKPYMHHSRHLHALRRPRGSGGRF 180 689*******************9999*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.4E-30	118	183	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.99	119	183	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-20	122	144	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.1E-23	122	180	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-20	157	180	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAMQTSPQIS WWNAFGSQPL PPVSLAGDSD SFGSAVETEH GVDKQNNSAT HLAFSLGDVK 60 SSRVVAKPHG AAFSMQPPCL ELGFTQQQMY PCVEQGYYGV VSAYGSQSRV MLPLNMETED 120 GTIFVNSKQY HAIIRRRQSR AKAAAVLDQN KLSSRGRKPY MHHSRHLHAL RRPRGSGGRF 180 LNTKSGTDAK KADGTKQTQS QAMSQQSNSQ NSEVLHPESG TMNLSTGLNV SGSEVTSMNY 240 FLSSPVHPLG GMVMPGKWTA SVAAMDNGCC YFKT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g92_A	9e-17	120	181	2	60	HAPB protein
4g91_A	9e-17	120	181	2	60	HAPB protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352991	1e-148	AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009124866.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
Refseq	XP_009124865.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X2
Refseq	XP_009124864.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-2-like isoform X1
Swissprot	Q9M9X4	1e-160	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A078G025	0.0	A0A078G025_BRANA; BnaAnng02740D protein
STRING	Bra040529.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	1e-152	nuclear factor Y, subunit A2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]